Archive for the 'Uncategorized' category

Thought of the day

Oct 14 2016 Published by under Uncategorized

Please explain to me why we are supposed to coddle the supposedly normal or centrist Republicans at this point. And pat them soothingly and give them cookies because finally, at this late date, they have discovered Trumpism is horrible.

What is to be gained here?

24 responses so far

Can you train resilience into grad students or postdocs?

Sep 13 2016 Published by under Uncategorized

As I've noted on these pages before, my sole detectable talent for this career is the ability to take a punch.

There are a lot of punches in academic science. A lot of rejection and the congratulations for a job well done are few and far between. Nobody ever tells you that you are doing enough.

"Looking good, Assistant Professor! Just keep this up, maybe even chill a little now and then, and tenure will be no problem!" - said no Chair ever.

My concern is that resilience in the face of constant rejection, belittling and unkind comparisons of your science to the true rock stars in a Lake Wobegon approach can have a selection effect. Only certain personality types can stand this.

I happen to have one of these personality types but it is not something of any particular credit. I was born and/or made this way by my upbringing. I cannot say anyone helped to train me in this way as an academic scientist*.

So I am at a complete loss as to how to help my trainees with this.

Have you any insights Dear Reader? From your own development as a scientist or as a supervisor of other scientists?

Related Reading: Tales of postdocs past: what did I learn?
*well maybe indirectly. And not in a way I care to extend to any trainee of mine thankyewveerymuch.

71 responses so far

Your Grant in Review: Throwing yourself on the mercy of the study section court

Aug 24 2016 Published by under Careerism, Grant Review, NIH, NIH Careerism, Uncategorized

A question and complaint from commenter musclestumbler on a prior thread introduces the issue.

So much oxygen is sucked up by the R01s, the med schools, etc. that it tends to screw over reviews for the other mechanisms. I look at these rosters, then look at the comments on my proposals, and it's obvious that the idea of doing work without a stable of postdocs and a pool of exploitable Ph.D. students is completely alien and foreign to them.

and extends:

I personally go after R15 and R03 mechanisms because that's all that can be reasonably obtained at my university. ... Postdocs are few and far between. So we run labs with undergrads and Masters students. Given the workload expectations that we have in the classroom as well as the laboratory, the R15 and R03 mechanisms support research at my school. Competing for an R01 is simply not in the cards for the productivity level that we can reasonably pursue...

This isn't simply fatalism, this is actual advice given by multiple program officers and at workshops. These mechanisms are in place to facilitate and foster our research. Unfortunately, these are considered and reviewed by the same panels that review R01s. We are not asking that they create an SEP for these mechanisms - a "little kids table" if you will - but that the panels have people with these similar institutions on them. I consider it a point of pride that my R15 is considered by the same reviewers that see the R01s, and successfully funded as well.

The point is that, the overwhelming perception and unfortunate reality is that many, many, many of the panelists have zero concept of the type of workload model under which I am employed. And the SROs have a demonstrably poor track record of encouraging institutional diversity. Sure, my panel is diverse- they have people from a medical school, an Ivy League school, and an endowed research institution on the West Coast. They have Country, and Western!

I noted the CSR webpage on study section selection says:

Unique characteristics of study sections must be factored into selection of members. The breadth of science, the multidisciplinary or interdisciplinary nature of the applications, and the types of applications or grant mechanisms being reviewed play a large role in the selection of appropriate members.

It seems very much the case to me that if R15s are habitually being reviewed in sections without participation of any reviewers from R15-eligible institutions, this is a violation of the spirit of this clause.

I suggested that this person should bring this up with their favorite SROs and see what they have to say. I note that now that there is a form for requesting "appropriate expertise" when you submit your NIH grant, it may also be useful to use this to say something about R15-eligible reviewers.

But ultimately we come to the "mercy of the court" aspect of this issue. It is my belief that while yes, the study section is under very serious constraints these days, it is still a human behavior that occasionally lets real humans make rational decisions. Sometimes, reviewers may go for something that is outside of the norm. Outside of the stereotype of what "has" to be in the proposal of this type. Sometimes, reviewers may be convinced by the peculiarities of given situation to, gasp, give you a break. So I suggested the following for this person who had just indicated that his/her R15s do perfectly well in a study section that they think would laugh off their R01 application.

I think this person should try a trimmed down R01 in this situation. Remember the R01 is the most flexible in terms of scope- there is no reason you cannot match it to the budget size of any of the other awards. The upside is that it is for up to five years, better than AREA/R15 (3 y) or R03 (2 y). It is competitively renewable, which may offer advantages. It is an R01, which, as we are discussing in that other thread, may be the key to getting treated like a big kid when it comes to study section empanelment.

The comments from musclestubmler make it sound as if the panels can actually understand the institutional situation, just so long as they are focused on it by the mechanism (R15). The R15 is $100K direct for three years, no? So why not propose an R01 for $100K direct for five years? or if you, Dear Reader, are operating at an R03 level, ask for $50K direct or $75K direct. And I would suggest that you don't just leave this hidden in the budget, sprinkle wording throughout everywhere that refers to this being a go-slow but very inexpensive (compared to full mod) project.

Be very clear about your time commitment (summers only? fine, just make it clear) and the use of undergrads (predict the timeline and research pace) in much the same way you do for an R15 but make the argument for a longer term, renewable R01. Explain why you need it for the project, why it is justified and why a funded version will be productive, albeit at a reduced pace. See if any reviewers buy it. I would.

Sometimes you have to experiment a little with the NIH system. You'd be surprised how many times it works in ways that are not exactly the stereotypical and formal way things are supposed to work.

27 responses so far

First and second class postdocs

Aug 17 2016 Published by under Uncategorized

Potnia has some thoughts on how not to manage trainees in your lab if they have different compensation levels.

This may be important come December if your University decides to create a time-clock 40 h per week category of postdoc. Dealing with the new overtime rules may induce some Universities to try to make that work.

Potnia points out that effective management will be needed for the different classes of trainees at the same nominal level.

Go Read.

2 responses so far

Simone Manuel Swims Really Fast

Aug 12 2016 Published by under Uncategorized

via sbnation:

With the win, Manuel became the first black woman in Olympic history to earn an individual swimming gold medal and the first African-American woman to win an individual medal.

No responses yet

More politico professional parallels

Aug 03 2016 Published by under Uncategorized

Is the RealSolution to the stresses of the NIH grant system best described by the tone of the RNC or the DNC convention?

7 responses so far

NIH Director Collins and CSR Director Nakamura continue to kick the funding disparity can down the road

A News piece in Science by Jeffrey Mervis details the latest attempt of the NIH to kick the Ginther can down the road.

Armed with new data showing black applicants suffer a 35% lower chance of having a grant proposal funded than their white counterparts, NIH officials are gearing up to test whether reviewers in its study sections give lower scores to proposals from African-American applicants. They say it’s one of several possible explanations for a disparity in success rates first documented in a 2011 report by a team led by economist Donna Ginther of the University of Kansas, Lawrence.

Huh. 35%? I thought Ginther estimated more like a 13% difference? Oh wait. That's the award probability difference. About 16% versus 29% for white applicants which would be about a 45% lower chance. And this shows "78-90% the rate of white...applicants". And there was Nakamura quoted in another piece in Science:

At NIH, African-American researchers “receive awards at “55% to 60% the rate of white applicants,” Nakamura said. “That's a huge disparity that we have not yet been able to seriously budge,” despite special mentoring and networking programs, as well as an effort to boost the number of scientists from underrepresented minorities who evaluate proposals.

Difference vs rate vs lower chance.... Ugh. My head hurts. Anyway you spin it, African-American applicants are screwed. Substantially so.

Back to the Mervis piece for some factoids. researchers are more likely to have their applications for an R01 grant—the bread-and-butter NIH award that sustains academic labs—thrown out without any scientists are less likely to resubmit a revised proposal ...whites submit at a higher rate than blacks...


The bias study would draw from a pool of recently rejected grant applications that have been anonymized to remove any hint of the applicant’s race, home institution, and training. Reviewers would be asked to score them on a one-to-nine scale using NIH’s normal rating system.

It's a start. Of course, this is unlikely to find anything. Why? Because the bias at grant review is a bias of identity. It isn't that reviewers are biased against black applicants, necessarily. It is that they are biased for white applicants. Or at the very least they are biased in favor of a category of PI ("established, very important") that just so happens to be disproportionately white. Also, there was this interesting simulation by Eugene Day that showed a bias that is smaller than the non-biased variability in a measurement can have large effects on something like a grant funding system [JournalLink].

Ok, so what else are they doing?

NIH continues to wrestle with the implications of the Ginther report. In 2014, in the first round of what NIH Director Francis Collins touted as a 10-year, $500 million initiative to increase the diversity of the scientific workforce, NIH gave out 5-year, $25 million awards to 10 institutions that enroll large numbers of minority students and created a national research mentoring network.

As you know, I am not a fan of these pipeline-enhancing responses. They say, in essence, that the current population of black applicant PIs is the problem. That they are inferior and deserve to get worse scores at peer review. Because what else does it mean to say the big money response of the NIH is to drum up more black PIs in the future by loading up the trainee cannon now?

This is Exhibit A of the case that the NIH officialdom simply cannot admit that there might be unfair biases at play that caused the disparity identified in Ginther and reinforced by the other mentioned analyses. The are bound and determined to prove that their system is working fine, nothing to see here.

So....what else ?

A second intervention starting later this year will tap that fledgling mentoring network to tutor two dozen minority scientists whose R01 applications were recently rejected. The goal of the intervention, which will last several months, is to prepare the scientists to have greater success on their next application. A third intervention will educate minority scientists on the importance of resubmitting a rejected proposal, because resubmitted proposals are three times more likely to be funded than a de novo application from a researcher who has never been funded by NIH.

Oh ff..... More of the same. Fix the victims.

Ah, here we go. Mervis finally gets around to explaining that 35% number

NIH officials recently updated the Ginther study, which examined a 2000–2006 cohort of applicants, and found that the racial disparity persists. The 35% lower chance of being funded comes from tracking the success rates of 1054 matched pairs of white and black applicants from 2008 to 2014. Black applicants continue to do less well at each stage of the process.

I wonder if they will be publishing that anywhere we can see it?

But here's the kicker. Even faced with the clear evidence from their own studies, the highest honchos still can't see it.

One issue that hung in the air was whether any of the disparity was self-inflicted. Specifically, council members and NIH officials pondered the tendency of African-American researchers to favor certain research areas, such as health disparities, women’s health, or hypertension and diabetes among minority populations, and wondered whether study sections might view the research questions in those areas as less compelling. Valantine called it a propensity “to work on issues that resonate with their core values.” At the same time, she said the data show minorities also do less well in competition with their white peers in those fields.

Collins offered another possibility. “I’ve heard stories that they might have been mentored to go into those areas as a better way to win funding,” he said. “The question is, to what extent is it their intrinsic interest in a topic, and to what extent have they been encouraged to go in that direction?”

Look, Ginther included a huge host of covariate analyses that they conducted to try to make the disparity go away. Now they've done a study with matched pairs of investigators. Valantine's quote may refer to this or to some other analysis I don't know but obviously the data are there. And Collins is STILL throwing up blame-the-victim chaff.

Dude, I have to say, this kind of denialist / crank behavior has a certain stench to it. The data are very clear and very consistent. There is a funding disparity.

This is a great time to remind everyone that the last time a major funding disparity came to the attention of the NIH it was the fate of the early career investigators. The NIH invented up the ESI designation, to distinguish it from the well established New Investigator population, and immediately started picking up grants out of the order of review. Establishing special quotas and paylines to redress the disparity. There was no talk of "real causes". There was not talk of strengthening the pipeline with better trainees so that one day, far off, they magically could better compete with the established. Oh no. They just picked up grants. And a LOT of them.

I wonder what it would take to fix the African-American PI disparity...

Ironically, because the pool of black applicants is so small, it wouldn’t take much to eliminate the disparity: Only 23 more R01 applications from black researchers would need to be funded each year to bring them to parity.

Are you KIDDING me? That's it?????

Oh right. I already figured this one out for them. And I didn't even have the real numbers.

In that 175 bin we'd need 3 more African-American PI apps funded to get to 100%. In the next higher (worse) scoring bin (200 score), about 56% of White PI apps were funded. Taking three from this bin and awarding three more AA PI awards in the next better scoring bin would plunge the White PI award probability from 56% to 55.7%. Whoa, belt up cowboy.

Moving down the curve with the same logic, we find in the 200 score bin that there are about 9 AA PI applications needed to put the 200 score bin to 100%. Looking down to the next worse scoring bin (225) and pulling these 9 apps from white PIs we end up changing the award probability for these apps from 22% to ..wait for it..... 20.8%.

Mere handfuls. I had probably overestimated how many black PIs were seeking funding. If this Mervis piece is to be trusted and it would only take 23 pickups across the entire NIH to fix the problem....


Twenty three grants is practically rounding error. This is going to shake out to one or maybe three grants per year for the ICs, depending on size and what not.

Heck, I bet they fund this many grants every year by mistake. It's a big system. You think they don't have a few whoopsies sneak by every now and again? Of course they do.

But god forbid they should pick up 23 measly R01s to fix the funding disparity.

37 responses so far

Academia is a fantastical dream weaver and you need to wake up

Jun 08 2016 Published by under Uncategorized

Higher education in the US weaves, for many students, a fantastical dream. 

You can do what you want and people will pay you for it!

Any intellectual pursuit that interests your young brain will end up as a paying career! 

This explains why there are so many English majors who can't get jobs upon graduation. I know, an easy target. Also see Comm majors. 

But we academic scientists are the absolute worst at this. 
It results in a pool of postdoc scientist PhDs who are morally outraged to find out the world doesn't actually work that way. 

Yes. High JIF pubs and copious grant funding are viewed as more important than excellent teaching reviews and six-sigma chili peppers or wtfever.
In another context, yeah, maybe translational research is a tiny bit easier to fund than your obsession with esoteric basic research questions. 

29 responses so far

Outcome of SABV initiative

Jun 08 2016 Published by under Uncategorized

I was just thinking the coming 9 mo should reveal a steady trickle of one to two Figure stabs at sex-differences comparisons.

I'm predicting that some of the people who generated their first studies as Preliminary Data to head off SABV grant critique are going to publish.

Yes, even if results were negative. They'll need this for the next round to excuse the failure to include the female animals in the next proposals.

9 responses so far

Your Grant in Review: Scientific Premise

May 28 2016 Published by under Uncategorized

I am starting to suspect that the Scientific Premise review item will finally communicate overall excitement/boredom to the applicant. This will be something to attend closely when deciding to revise an application or just to start over. 

17 responses so far

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