Archive for the 'Postdoctoral Training' category

An issue of data ownership

Mar 23 2016 Published by under Careerism, Mentoring, Postdoctoral Training

An interesting retraction of an Editorial expression of concern hit the Twitts:

The Editors and publisher have withdrawn an Expression of Concern previously contributed by noted neuroscientist David Amaral, with his agreement.

The original version of this Comment ‘Expression of Concern’ published by D. Amaral has been withdrawn by the Publisher in relation to the paper: ‘Organization of connections of the basal and accessory basal nuclei in the monkey amygdala’ by Eva Bonda, published in Volume 12, pp. 1971-1992 (doi: 10.1046/j.1460-9568.2000.00082.x). The review carried out at the University of California at Davis in December 2001 (brought to the publisher's attention in February 2016) concluded that the allegation against Eva Bonda described in the commentary ‘Expression of Concern’ by D. Amaral did not meet The Office of Research Integrity's definition of research misconduct, and was not pursued further.

That November 2000 Expression of Concern read, in part:

It has recently come to my attention that Eva Bonda has published a paper in the European Journal of Neuroscience entitled, ‘Organization of connections of the basal and accessory basal nuclei in the monkey amygdala’ ( Bonda, 2000). The data described in this paper were produced by my students and me at the University of California, Davis. Support for carrying out the experiments that produced these data was provided by the National Institute of Mental Health, through grant MH 41479 for which I am the Principal Investigator.
..The publication of this single-authored paper was totally unauthorized. Eva Bonda was a postdoctoral fellow in our laboratory.

Ok, so PI asserts ownership of data collected in his lab. Fine, fine... Typical story of postdoc who thinks that she owns and controls her data? And the PI was blocking publication for reasons unknown. We all have been down the various roads of he said/she said often enough to imagine a variety of scenarios where we might alternately side with the trainee or the postdoc.


She had access to the preparations that were described in the paper. However, she did not carry out any of the experimental procedures involved in making the tracer injections reported in this paper. These injections were made by other students in the laboratory and by me. Moreover, other than processing the tissue from a small minority of the reported cases, it was the technical staff of our laboratory rather than Eva Bonda that carried out the histological processing of the reported experiments.

Ah. Well that sounds bad. This suggests it is a little more like theft of credit from more people than just the PI. I happen to disagree with the not-infrequent pose of postdocs on the internet that they own and control "their" data that they generated in the laboratory of a given PI. But that is much more of an arguable position than is taking data generated by many people other than one's self and asserting control/ownership from a position that is not the PI.

Amaral finishes by making the charge of academic misconduct against Bonda very explicit:

In my view, the appropriation and publication of these data is a serious breach of scientific ethics. I have asked the Editor of the European Journal of Neuroscience to take appropriate action including publication of this Expression of Concern. Upon consultation with the Office of Research Integrity, Public Health Service, US Department of Health and Human Services, the agency responsible for protecting the integrity of NIH funded research programs, the UC Davis campus has agreed to initiate a review of the allegations of research misconduct. Based on the outcome of this review, further actions, including request for full retraction, may be taken concerning this.

Of course, the recent retraction of the Expression of Concern indicates that Bonda, the postdoc, was exonerated of misconduct charges in 2001!

Wow. Why did it take Amaral 15 years to retract his accusations? This seems spectacularly dickish to me.

And given the fact that the postdoc was not found guilty of misconduct by the University, it really questions the factual basis of his assertions in the original Expression of Concern. If I were the postdoc in question, I might have launched a counter accusation of professional misconduct. Depending, of course, on the details of the inquiry and what each party did and did not do. The exoneration of the postdoc may simply have been a lack of proof of intent, rather than any disagreement over the facts.

I notice, however, an interesting poll put up by an individual who both was RTing the tweets that alerted me to this situation and apparently co-published with Amaral.

Gee, I wonder what the nature of the dispute was between Amaral and Bonda?

The subject of this poll is the juxtaposition of "good data" with "high quality standards" of the PI. Given what Amaral does, I'm going out on a limb and assuming we are talking about how pretty the immunohistochemical images are or are not (the Bonda paper is nearly all immuno-staining pictures).

18 responses so far

On whitening the CV

I heard yet another news story* recently about the beneficial effects of whitening the resume for job seekers.

I wasn't paying close attention so I don't know the specific context. 

But suffice it to say, minority job applicants have been found (in studies) to get more call-backs for job interviews when the evidence of their non-whiteness on their resume is minimized, concealed or eradicated. 

Should academic trainees and job seekers do the same?

It goes beyond using only your initials if your first name is stereotypically associated with, for example, being African-Anerican. Or using an Americanized nickname to try to communicate that you are highly assimilated Asian-Anerican. 

The CV usually includes awards, listed by foundation or specific award title. "Ford Foundation" or "travel award for minority scholars" or similar can give a pretty good clue. But you cannot omit those! The awards, particularly the all-important "evidence of being competitively funded", are a key part of a trainee's CV. 

I don't know how common it is, but I do have one colleague (I.e., professorial rank at this point) for whom a couple of those training awards were the only clear evidence on the CV of being nonwhite. This person stopped listing these items and/or changed how they were listed to minimize detection. So it happens.

Here's the rub. 

I come at this from the perspective of one who doesn't think he is biased against minority trainees and wants to know if prospective postdocs, graduate students or undergrads are of Federally recognized underrepresented status.


Because it changes the ability of my lab to afford them. NIH has this supplement program to fund underrepresented trainees. There are other sources of support as well. 

This changes whether I can take someone into my lab. So if I'm full up and I get an unsolicited email+CV I'm more likely to look at it if it is from an individual that qualifies for a novel funding source. 

Naturally, the applicant can't know in any given situation** if they are facing implicit bias against, or my explicit bias for, their underrepresentedness. 

So I can't say I have any clear advice on whitening up the academic CV. 

*probably Kang et al.

**Kang et al caution that institutional pro-diversity statements are not associated with increased call-backs or any minimization of the bias.

29 responses so far

Blooding the trainees

In that most English of pastimes, fox hunting, the noobs are smeared about the face with the blood of the poor unfortunate fox after dismembering by hound has been achieved.

I surmise the goal is to get the noob used to the less palatable aspects of their chosen sporting endeavor. 

Anyway, speaking of manuscript review and eventual publication, do you plan a course for new trainees in the lab?

I'm wondering if you have any explicit goals for them- Should a mentor try to get new postdocs or grads a pub, any pub as quickly and easily as possible?

Or should they be thrown into a multi-journal fight so as to fully experience the joys of desk rejection, ultimate denial after four rounds of review somewhere and the final relief of just dumping that Frankensteinian monster of a paper in a lowly journal and being done. 

Do you plan any of this out for your newest trainees?

19 responses so far

I'm 14 carat......want to look good for the PI, mmm

Have you ever been in a lab with a golden-child trainee?

Was it you?

61 responses so far

NCI will ease that difficult transition to postdoc

I am still not entirely sure this is not an elaborate joke.

The purpose of the NCI Predoctoral to Postdoctoral Fellow Transition Award (F99/K00) is to encourage and retain outstanding graduate students who have demonstrated potential and interest in pursuing careers as independent cancer researchers. The award will facilitate the transition of talented graduate students into successful cancer research postdoctoral appointments, and provide opportunities for career development activities relevant to their long-term career goals of becoming independent cancer researchers.

The need for a transition mechanism that graduate students can apply for is really unclear to me.

Note: These are open to non-citizens on the appropriate visa. This is unlike the NRSA pre- and post-doc fellowships.

27 responses so far

Fewer postdocs?

Oct 23 2015 Published by under Postdoctoral Training

From @NatureNews:


The full story by Monya Baker

21 responses so far

Survey of the day: Postdoc diploma

Oct 02 2015 Published by under Careerism, Postdoctoral Training

Are you familiar with any Universities that award some sort of  official recognition of the completion of a postdoctoral term of scientific training? 
When, where, etc if you feel comfortable.....

30 responses so far

Tales from the search committee

Aug 21 2015 Published by under Careerism, Postdoctoral Training

Prof Booty has written about chairing a recent search committee.

Starting a little over a year ago, I served as chair of my department’s search committee, which concluded in the spring with a successful hire. With that experience still relatively fresh, I hope I can share some important insights into how our top candidates caught our eye, as well as the behind-the-scenes process of selecting those candidates.

Go read.

No responses yet


Jul 24 2015 Published by under Postdoctoral Training, Postgraduate Training

Often times in academics we are anticipating a job change in the near future. Postdocs, in particular, since this is supposed to be a temporary job. But faculty occasionally anticipate a job change too. On the market b/c you fear tenure won't fall, to leverage progress into a better job, to jump out of the rat race, to join Administration. 

I give advice based on Yoda's wisdom. 

Yoda: Ready are you? What know you of ready? For eight hundred years have I trained Jedi. My own counsel will I keep on who is to be trained. A Jedi must have the deepest commitment, the most serious mind. This one a long time have I watched. All his life has he looked away... to the future, to the horizon. Never his mind on where he was. Hmm? What he was doing. Hmph. Adventure. Heh. Excitement. Heh. A Jedi craves not these things. You are reckless. 

No, not the paternalistic grouch stuff. In this he is worse than a greybeard of science. 

No it is the part about doing a good job on what you are currently doing. To me this is the basis for making the future stuff more likely to go your way.  

No matter how removed the anticipated job category, the candidate who has been successful in her previous job is going to look better. 

I entertained the McKinsey thing at one point during my training. Looked into it, saw who they hired and spoke to a friend of a sibling who went that way. They did not want people who had a disappointing career in science up to that point. They knew what CN or S publications meant. They wanted excellence.

Now of course plenty of people get alternative career jobs after a disappointing career as grad student or postdoc. But I think the take away message is that you should maximize your success in whatever job you are doing now. Don't just slack because you plan to be out-o-here in a year. 

Success now increases the chances of getting into whatever next job lies over the horizon. 

There is also the consideration that you may find yourself staying in the job you have much longer than anticipated or desired. A year from now, you don't want to look back and wish you had finished that experiment, paper, grant application or whatever.

Work based on the idea you may still be in this job in a year or three. Sometimes things happen. Maybe the local institution finally steps up and does you a solid. Maybe that firm job offer elsewhere is denied by the Dean or P&T committee. Maybe the University System puts down a hiring freeze.

You'll be better off if you are taking care of business in your existing job.

63 responses so far

Mentoring and parenting

Like it or not, your mentoring behavior is intimately tied to the experiences you had as a scientific trainee. Let me rephrase that for emphasis. Tied to the way you experienced your training.

In the very general sense, if you thought something was good for you, you are going to tend to try to extend that to your trainees. And if something was bad for you, you are going to try to avoid that for your trainees.

Obviously, the ability that you have to emulate or avoid certain behaviors of your mentors-of-reference* is not going to be perfect. But let us assume for argument's sake that you can make a fair stab at mentoring the way that you would intend yourself to mentor.

This is not all that dissimilar to parenting, I find. There are obvious ways in which I think my parents did an absolutely bang up job of raising me. They set me on a path of life that is in many ways ideal. A career that is fulfilling, a political and social stance that I am proud of, a strength of will and freedom from many of the family-drama related pathologies that plague many adults. I would hope to provide this type of parenting to my own children. Absolutely.
Continue Reading »

20 responses so far

Older posts »