Archive for the 'Ponder' category

Question of the Day

Jul 15 2016 Published by under Ponder

Did you have a side job as a graduate student or postdoc?
Or as faculty? 

55 responses so far

Newly funded NIH PIs

Jun 18 2016 Published by under Ponder

It would be fascinating if NIH did audits to search for who gets funded with their first grant by pedigree and productivity measures.

I'd want to see categorization of number of first and last author pubs. Of course. Some sort of measure of productivity in the time since being appointed to the independent investigator title. Mediated by JIF.

Then pedigree by the grant wealth and productivity of the pre-independence mentors.

I wonder if you can get away with crap productivity of you are tied into the network. And if you can overcome your Outsider status by generating a ton of pubs.

I wonder how likely a newb is to be funded as the years elapse from the time of first appointment without senior author publications.

42 responses so far

Thought of the Day

May 13 2016 Published by under Conduct of Science, Ponder, Tribe of Science

I think I have made incremental progress in understanding you all "complete story" muppets and in understanding the source of our disagreement.

There are broader arcs of stories in scientific investigation. On this I think we all agree.

We would like to read the entire arc. On this, I think, we all agree.

The critical difference is this.

Is your main motivation that you want to read that story and find out where it goes?

Or is your main motivation that you want to be the one to discover, create and/or tell that story, all by your lonesome, so you get as much credit for it as possible?

While certainly subject to scientific ego, I conclude that I lean much more toward wanting to know the story than you "complete story" people do.

Conversely, I conclude that you "shows mechanism", "complete story" people lean towards your own ego burnishing for participation in telling the story than you do towards wanting to know how it all turns out as quickly as possible.

35 responses so far

Jared Fogle and Prisoner Treatment

Mar 16 2016 Published by under Ponder

Jared Fogle, convicted of sex crimes involving minors, was assaulted and battered severely in prison.

Jens Foell had some observations on Twitter.

Absolutely. There is a certain segment that cheers when a little extra prison justice is meted out. I have myself been, occasionally, guilty of being a little too facile with references to prison rape (of the "don't drop the soap" variety) and, no doubt, the extra justification we seem to hold for beat downs (or killings) of people convicted of certain crimes, like child sexual offenses or serial murder.

It needs to stop. We shouldn't respond to the news of the day about Jared Fogle or even the Aurora shooter, being attacked in prison with a little frisson of pleasure. It isn't a system of law if it permits prisoners to attack each other. The idea that there is a cottage industry of consultants to prepare you for not getting seriously harmed in prison should horrify us.

I bother to say this because some twitter wag was really offended

that this should come up solely in the case of Jared Fogle.

It's a convenient excuse but prison violence happens all the time and it should not be tolerated.

No matter the crime.

8 responses so far


Feb 29 2016 Published by under Ponder

There are these moments in science where you face a decision.

Am I going to be the selfish asshole here?

Or am I going to follow the Golden Rule?

and then, if you head a lab group, you think....

I am not just acting for myself. I am a member of a team and they have their own interests. Presumably all of the staff, at the least, have interest in having a job, here, in this laboratory group or they would have left. Trainees have explicit or implicit career goals- things they would like to accomplish here in this laboratory.

Do doing unto others as I would like done to myself is perhaps not in good alignment with what my other team members would prefer done to those others. And they may not have the same short term / long term concerns that I do*.

One of those things the team may not be all that concerned about is my collection of tender sensibilities. And what I mean by that is that we all evolve a code of behavior within our profession. Some of this is trained into us explicitly or implicitly by the departments, laboratories and subfields in which we have interacted up to the present. Some of this is no doubt due to the broad experiences from parents, teachers, coaches, social influences, etc from long before we thought about starting the life of a professional scientist.

And I'm here to tell you, Dear Reader, we all differ.

You've seen it here in the comments on this blog. Many of us have very different attitudes about the proper, ethical and morally right way to be scientists. Some of these are very clearly deeply-felt issues of asserted rectitude...which other people find to be absurd pedantry and/or utterly unimportant. Some of these are issues of reaction...."those guys in our field behave like this and it is bad"....which again proves the diversity of behavior within our respective professional lives.

There is another truism which I believe deeply. We're all the asshole to somebody at some point in time. Not sure how this fits in but there you have it.

Science can be competitive. We all know that. There is sharp and pointed competition for scientific priority, for papers accepted for publication in the most highly-desired journals, for faculty positions, for grants, for graduate school admission in the right place and for a training opportunity with the right mentors.

Competition means, obviously, that you have to beat out the other guy. And science is not a time-trial. It is not just you against the clock. It is not even a pursuit race, much as we might describe it that way. Science is at the very least a mass-start race in which elbows, necessarily, are used to advantage. Some might think it is a full-contact sport in which a certain amount of checking is expected, legal and totally acceptable. Some may not like any contact.

So....what if your personal attitude is that science is time-trial or pursuit? Or perhaps it is a game of futbol that does not involve players ever touching one another, only the ball?

If that is your attitude and you are less-than-completely-correct, it's okay. You still can play. You may even be able to tolerate taking the hit but insist that you, yourself, will never throw a check on anyone else.


Also known as "the loser".

Still, we're just here to play, enjoy the game, find the beauty, eh? Who cares, as long as we still stay in the league?

Problem is, our teammates may not be so lucky. They may not be able to stay in the league if their franchise player*** refuses to mix it up. Their team might lose and fade into obscurity. Then they can't showcase their moves in the playoffs or on Prime Time teevee broadcasts. They don't get to play with the best of the best on their team, are always playing a cowering defense...and getting crushed anyway.

Point being this. I have been contemplating whether I have an obligation to play up to what the refs give me when it comes to my career. Should we be playing it physical with constant grinding defense? Should we take every opportunity to elbow and grab and hook when the refs aren't looking?

Should Reviewer #3 behavior be my watchword, instead of the Golden Rule?

It's perfectly legal.

*A trainee**, presumably, would prefer that the current short-term success of the lab is high, even if there are negative implications for the lab 5, 10, 15 years down the road.

**A technician may prefer that the laboratory is rolling in the dough now, to better facilitate raises, promotions, seniority and skill-acquisition should she or he need to jump ship in a few years.


37 responses so far

Hey Cat Fans, LOOK! You too can be just as stupid as a dog owner!

Feb 13 2013 Published by under Day in the life of DrugMonkey, Ethics, FWDAOTI, Ponder

Apparently some epic dumbasses decided that the common housecat, bloodthirsty lethal little murder-cat killing machine that it is, wasn't quite badass enough.

What. Is. Wrong. With. People?

12 responses so far

Placing PLoS ONE in the appropriate evaluative context

Jan 14 2013 Published by under Impact Factor, PLoS ONE, Ponder

As you know, I have a morbid fascination with PLoS ONE and what it means for science, careers in science and the practices within my subfields of interest.

There are two complaints that I see as supposed objective reasons for old school folks' easy complaining bout how it is not a real journal. First, that they simply publish "too many papers". It was 23,468 in 2012. This particular complaint always reminds me of

which is to say that it is a sort of meaningless throwaway comment. A person who has a subjective distaste and simply makes something up on the spot to cover it over. More importantly, however, it brings up the fact that people are comparing apples to oranges. That is, they are looking at a regular print type of journal (or several of them) and identifying the disconnect. My subfield journals of interest maybe publish something between about 12 and 20 original reports per issue. One or two issues per month. So anything from about 144 to 480 articles per year. A lot lower than PLoS ONE, eh? But look, I follow at least 10 journals that are sort of normal, run of the mill, society level journals in which stuff that I read, cite and publish myself might appear. So right there we're up to something on the order of 3,000 article per year.

PLoS ONE, as you know, covers just about all aspects of science! So multiply my subfield by all the other subfields (I can get to 20 easy without even leaving "biomedical" as the supergroup) with their respective journals and.... all of a sudden the PLoS ONE output doesn't look so large.

Another way to look at this would be to examine the output of all of the many journals that a big publisher like Elsevier puts out each year. How many do they publish? One hell of a lot more that 23,000 I can assure you. (I mean really, don't they have almost that many journals?) So one answer to the "too many notes" type of complaint might be to ask if the person also discounts Cell articles for that same reason.

The second theme of objection to PLoS ONE is as was recently expressed by @egmoss on the Twitts :

An 80% acceptance rate is a bit of a problem.

So this tends to overlook the fact that much more ends up published somewhere, eventually than is reflected in a per-journal acceptance rate. As noted by Conan Kornetsky back in 1975 upon relinquishing the helm of Psychopharmacology:

"There are enough journals currently published that if the scientist perseveres through the various rewriting to meet style differences, he will eventually find a journal that will accept his work".

Again, I ask you to consider the entire body of journals that are normal for your subfield. What do you think the overall acceptance rate for a given manuscript might be? I'd wager it is competitive with PL0S ONE's 80% and probably even higher!

49 responses so far

A question for my readers on spawning

Aug 16 2012 Published by under Ponder

A recent comment from Spiny Norman waxes unimpressed with child-care cost complaints of those in the academic pipeline.

My partner and I knew we were going into demanding, high-risk, poorly-compensated public service careers. We knew that both time and money would be limiting, and saw little point to having kids if they were mostly going to be raised by paid surrogates.

We also looked around, and concluded that the planet was/is *not* suffering from a shortage of fat, happy, high-carbon-footprint first world babies.

This makes me ponder. Continue Reading »

31 responses so far

Walking that narrow line

Jul 23 2012 Published by under Careerism, Ponder

The key to being a science rockstar, if you like that sort of thing*, is to become legendary in the minds of others while never believing it for a second yourself.

If you fail on the second part, you are just kind of a jerk.
*I don't, obv.

15 responses so far

and bam! the world turns a little bit.

Jul 02 2012 Published by under Ponder

sometimes stuff just brings you up short, you know?

Between our high schools, there were three out/outed gay kids. Not one – 0% – of them lived long enough to graduate. All three committed suicide – two in “car accidents” and one with his father’s gun.

I missed the GertyZ-hosted Diversity in Science carnival, Pride Edition.

Whether you are one of us queer scientists, an active ally, or a person who realizes that they have queer friends and/or family members that they care about. What does queer advocacy mean to you? What works? How do these issues change your life as a scientist?

Or, probably not "missed" it. I thought about chiming in several times. But as you know, Dear Reader, I don't like taking up self-appointed mantles of "ally" or anything like that.

I don't feel like I have anything authoritative to say beyond, "Be a fucking decent person, why doncha?".

And it isn't that hard at all. I am not particularly special, I've lived in a fairly heteronormative path of life and I'm, as a certain beloved blog commenter is fond of pointing out, blind as a bat to many of the hyphengendered issues.

So all I ever have is the usual.

I have friends that are gay. Friends from high school, friends from college (hmm, not sure about grad school, have to think about that) and friends from now. Colleagues in my professional life. Members of the extended family. Gay parents in the neighborhood within which I do my own parent thing.

They all deserve the same things everyone else deserves. Period, end of story, why is this even an issue anymore. This is the level of obviousness to me.

Advocacy? Not really, no.

I'm sure many of you are not much different from me....all I can ask is that you take the low-inertia path. Many of you are already on social media of various stripes....just take that extra effort to post your links and views and RT the hell out of things you see that support equality. It isn't big stuff but then, you already know how to bake your own cookies, right? you don't need your back patted.

You just want to make your support emphatically clear. You never know when a teenager is going to run across a critical mass of support out there at at a critical moment. Or when a right-wing relative on Fb is finally open to reason. Or when that advocacy link you posted or RT'd will finally, *finally* get through to Uncle Joe.

3 responses so far

Older posts »